Computing Environments

See a comparison of computing environment options

Integrated Analytics Platforms

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Secure hosting for sensitive data with web-based management and collaboration tools.

  • View, manipulate, and save data entirely in a protected environment without storing files on personal computers
  • Free access to research software applications, such as SAS, Stata, SPSS, R, TreeAge, Atlas.ti, MS Office, and Matlab - see full list
  • Collaboration tools, such as SharePoint, facilitate the conduct of multi-site research studies
Free up to 10GB/month for UCSF PIs

Information Commons

Clinical data at scale and very high performance, and an environment suited to pattern recognition and machine learning. This high performance compute cluster on AWS offers:

  • Access to de-identified structured EHR data; additional data sets coming soon, including de-identified clinical notes and images
  • Spark analytics engine, that enables fast data query via Spark-SQL, Machine Learning via Spark MLib, R via SparkR
  • Query data using PatientExploreR  
Free for UCSF Community