2018 Clinical Data Colloquium
For Researchers

Thursday, October 4th
Mission Bay Conference Center

Join us for the 2018 UCSF Clinical Data Colloquium for Research!

Where: Mission Bay Conference Center, San Francisco
When: October 4, 2018, 9:00 - 3:30 PM

After the overwhelming success and reviews from last year’s edition, we have expanded this year's Colloquium into an informative full day event, including a morning plenary session and afternoon break-out sessions. Details below!

Come and gain a broad understanding of the clinical data resources available (and coming soon) at UCSF, how they fit together and appropriate uses of each resource. This is a must-attend event for anyone that wants to know how to access, use and store the clinical data available for research - and for what’s around the corner!


8:30 - 9:00 Light Breakfast

MORNING: 9:00 - 12:15

9:00 - 9:10 Opening Address
Sam Hawgood, MBBS, Chancellor and Arthur and Toni Rembe Rock Distinguished Professor

9:10 - 9:35 An Exciting Time for Researchers
Atul Butte, MD, PhD, Director, Bakar Computational Health Sciences Institute    Presentation (UCSF Box)

9:35 - 10:25 Update and Overview of UCSF Clinical Data & Tools Available for Research
Rick Larsen, Director, Academic Research Systems    Presentation (UCSF Box)
Sharat Israni, PhD, Executive Director, Bakar Computational Health Sciences Institute    Presentation (UCSF Box)
Sharmila Majumdar, PhD, Professor of Radiology    Presentation (UCSF Box)

10:25 - 10:40 BREAK

10:40 - 11:10 The Learning Health System: Research + EHR data + APeX
Mark Pletcher, MD, MPH, Director, Informatics and Research Innovation, UCSF Clinical & Translational Science Institute
Nader Najafi, MD, UCSF Hospitalist
Joint Presentation (UCSF Box)

11:10 - 11:25 Managing Data Responsibly
Michael Blum, MD, Director, Center for Digital Health Innovation    Presentation (UCSF Box)

11:25 - 11:35 Training Opportunities at UCSF
Karla Lindquist, PhD, Data Science Scientific Lead, UCSF Library
Angela Rizk-Jackson, PhD, Director of Operations, Bakar Computational Health Sciences Institute
Joint Presentation (UCSF Box)

11:35 - 12:15 Panel Discussion: Real World Insights on the Frontiers of Clinical Research
Moderator: Julia Adler-Milstein, PhD, Director of the Center for Clinical Informatics and Improvement Research, Department of Medicine
Atul Butte, MD, PhD, Director, Bakar Computational Health Sciences Institute
Dana Ludwig, MD, Research Database Architect
Alvin Rajkomar, MD, Senior Research Scientist at Google Brain and Hospitalist at UCSF
Katherine Chou, MSCS, Head of Product, Research at Google

Panel Presentation (UCSF Box)

12:15 - 1:00 LUNCH and Raffle winner announcement!

AFTERNOON: 1:00 - 3:30 PM

The afternoon is comprised of 3 tracks, where we will host a deeper dive into the topics below, and in some cases, the sessions will be technical in nature.
Presentations will be posted as they become available - UCSF Access only.

Time Track 1
Setting up your systems and using UCSF EHR data
Track 2
Information Commons: Working with big data for research (UCSF EHR with images, clinical notes and more)
Track 3
Put Research into Practice: Connecting with APeX
1:00 - 1:30 Audience: General
Options for compute at UCSF - which to use and when    Presentation (UCSF Box)
Audience: Technical
Using Commons: Getting Started, Big Queries and Data mining with the Commons    Presentation (UCSF Box)
Audience: General
Overview of Patient Reported Outcomes and use in APeX    Presentation (UCSF Box)
1:35 - 2:05 Audience: General
Custom data collection with REDCaP and Qualtrics    Presentation (UCSF Box)
Audience: Technical
Using Commons: Imaging and Clinical Notes    Clinical Notes Presentation   |   Imaging Presentation (UCSF Box)
Audience: General
Overview of tools in EPIC currently being used for research studies (CDS, Predictive Analytics, FHIR, SMART, ACE6)    Presentation (UCSF Box)
2:05 - 2:15 Break Break Break
2:15 - 2:45 Audience: General (1 hour session)
Methods to use and visualize UCSF EMR de-identified data: (Research Data Browser, R, Tableau)    Presentation   |   RNotebook Demo (UCSF Box)
Audience: General
Using Commons: PatientExploreR    Presentation (UCSF Box)
Audience: Technical
Getting started with FHIR - Intro to the HSPC Sandbox and developing    Presentation (UCSF Box)
2:50 - 3:20 Audience: General
Commons In a Nutshell: Programmatic, Imaging, Notes, PatientExploreR    Presentation (UCSF Box)
Audience: General
How to move a project forward: DD&T and considerations for researchers and developers   Presentation (UCSF Box)